Zou Lab

Axonal Growth & Neuronal Regeneration


Zou lab is interested in molecular mechanisms of how neurons are born, how they extend axons, and why they fail to regenerate after CNS injury. We combine in vivo axon injury models, 3D organoid cultures, molecular biology, and various imaging and tissue engineering techniques to study novel signaling pathways and epigenetic mechanisms that promote neurogenesis and axonogenesis. Such knowledge is crucial for targeting molecules for effective CNS regeneration. Similar mechanisms that govern neural stem cell biology also have relevance in the malignant potency of tumor stem cells in glioblastoma, the most malignant type of brain tumor. The lab is dissecting the governing factors of glioma stem cell dormancy and tumor microenvironment, using both biomimetic 3D vascular glioma model and patient-derived xenograft model.

Hongyan Zou, MD, PhD

Contact Us

Zou Laboratory
Hongyan Zou, MD, PhD
Professor, Neuroscience
Professor, Neurosurgery
Lab: ICAHN 10-02
Office: ICAHN 10-20E
Office: 212.659.8694
Fax: 212.849.2599



CNS Diseases

  • In cases of brain or spinal cord injury, there is limited neuronal or axonal regeneration, due to both neuronal intrinsic and extrinsic barriers. The first research area of our laboratory is molecular mechanisms that promote axon growth potential in adult neurons. Neuroinflammation and glial reaction also heavily influence the functional outcome of neural repair, and our laboratory is actively investigating novel signaling pathways that govern glial response and neuroimmunity after CNS injury.
  • The second research area is to dissect how neural stem cells respond to injury signals in order to develop new strategies for neural repair.
  • Glioma stem cells share many similar molecular characteristics as neural stem cells. The third research area is to understand how tumor stem cells acquire dormancy and what are the niche factors in tumor microenvironment that are important for glioma quiescence.
Project 1: Molecular mechanisms of axon regeneration

  1. Transcriptional regulation of axon growth gene program.

How to promote axon regeneration remains an important unsolved question in neurobiology. Failure of CNS axon regeneration has been attributed to an inhibitory environment and an age-dependent decline of intrinsic axon growth potential. Our laboratory has been actively studying the close collaboration between regeneration-associated transcription factors and epigenetic machinery in order to turn on the pro-growth gene program in neurons. We combine in vivo mouse spinal cord injury models, neuronal cultures, molecular and epigenetic techniques to study chromatin landscapes and transcriptional mechanisms of regeneration genes.

  1. Neuroinflammation and glial reactivity after CNS injury.

A hostile injury environment constitutes an extrinsic barrier for successful axon regeneration.  Our laboratory combines cell type specific techniques, genome-wide transcriptomic analysis, and mouse genetic approaches to study signaling pathways and epigenetic mechanisms that underlie how microglia and astrocytes interact with one another during recovery phases after spinal cord injury.

Project 2: Neural stem cells plasticity for neural repair after CNS injury

Neural stem cells play an important role in modulating injury response after CNS injury. Our laboratory investigates molecular players that mediate injury response of neural stem cells during neurodevelopment and after CNS injury. We employ a variety of tools that include mouse genetics, stem cell cultures, 3D organoids, stroke models, imaging, and tissue-engineering techniques.

Project 3: Glioma dormancy, stem cell niche and tumor microenvironment

Malignant brain tumors frequently recur after therapy. Dormant tumor stem cells constitute potential sources for tumor recurrence. Our laboratory is teaming up with bioengineers to develop a novel biomimetic 3D glioma vascular model to dissect governing factors of glioma  quiescence.


Hypoxic niches attract and sequester tumor-associated macrophages and cytotoxic T cells and reprogram them for immunosuppression

Glioblastoma (GBM), a highly lethal brain cancer, is notorious for immunosuppression, but the mechanisms remain unclear. Here, we documented a temporospatial patterning of tumor-associated myeloid cells (TAMs) corresponding to vascular changes during GBM progression. As tumor vessels transitioned from the initial dense regular network to later scant and engorged vasculature, TAMs shifted away from perivascular regions and trafficked to vascular-poor areas. This process was heavily influenced by the immunocompetence state of the host. Utilizing a sensitive fluorescent UnaG reporter to track tumor hypoxia, coupled with single-cell transcriptomics, we revealed that hypoxic niches attracted and sequestered TAMs and cytotoxic T lymphocytes (CTLs), where they were reprogrammed toward an immunosuppressive state. Mechanistically, we identified chemokine CCL8 and cytokine IL-1β as two hypoxic-niche factors critical for TAM trafficking and co-evolution of hypoxic zones into pseudopalisading patterns. Therefore, perturbation of TAM patterning in hypoxic zones may improve tumor control.

Sattiraju A, et al.

Immunity, Volume 56, Issue 8, 2023, Pages 1825-1843.e6

Meet the Team

Dalia Halawani

Dalia Halawani

Assistant Professor

Jack Zhang

Jack Zhang

MD student

Sangjo Kang

Sangjo Kang

Postdoctoral Fellow

Sita Sadia

Sita Sadia

Master Student

Haofei Ni

Haofei Ni

Associate Researcher